PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E01594.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 136aa    MW: 14827.8 Da    PI: 6.5104
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E01594.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB134.14.2e-4242132292
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                       r+ d+++Pian++r m++vlP++a+i++dake +qecvsefisf+t+ea+ +c+++ r+t++++d+l a+a+lGf+dy+epl+v+l+++r 
  Migut.E01594.1.p  42 RDADQYMPIANITRTMRRVLPTHARIADDAKEAIQECVSEFISFITAEANGRCHKDYRRTVTPEDVLAAMASLGFNDYLEPLTVFLTNHRA 132
                       789************************************************************************************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-4037134IPR009072Histone-fold
SuperFamilySSF471134.66E-3145132IPR009072Histone-fold
PfamPF008082.1E-2147111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.9E-137593No hitNo description
PRINTSPR006153.9E-1394112No hitNo description
PRINTSPR006153.9E-13113131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
IVIRERGTAP AVAGPNAANI VAAPPNAVAG EVNLEHQQGF KRDADQYMPI ANITRTMRRV  60
LPTHARIADD AKEAIQECVS EFISFITAEA NGRCHKDYRR TVTPEDVLAA MASLGFNDYL  120
EPLTVFLTNH RAQNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A8e-3542131392NF-YB
4awl_B8e-3542131493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A8e-3542131493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012839450.11e-91PREDICTED: nuclear transcription factor Y subunit B-9-like
SwissprotQ9SFD85e-41NFYB9_ARATH; Nuclear transcription factor Y subunit B-9
TrEMBLA0A022RAV02e-66A0A022RAV0_ERYGU; Uncharacterized protein (Fragment)
TrEMBLA0A022R9A22e-66A0A022R9A2_ERYGU; Uncharacterized protein (Fragment)
STRINGVIT_19s0015g00580.t011e-40(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6044436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.27e-42nuclear factor Y, subunit B6